I found the La Tech athletic department financial statement for the same year as the Utep one (2002-2003): http://www.lla.state.la.us/fc/ltuncaa03.pdf
Total Revenues: 8,000,003
Total Expenditures: 7,914,904
Difference: 85,099
I'm still trying to find a line by line for Utep that is similar to La Tech's. Interesting that the wac sharing is worth 633k. Anyway, if you believe both these reports (and you would think they're both true seeing as how they're filed with the state) Utep does in fact have a significantly larger budget than La tech, a 2.5 million dollar difference, ~25%.
Taking it further, since the La tech is line by line you can see that a total of 4,139,018 (not even counting the wac contribution of 633k that utep does not list in the revenue section of their report) comes from places outside of the athletic department (state general fund, foundations/private gifts, in-kind contributions) Meaning the actual revenue the athletic department generates is only about 3.86 million a loss of over 4 million. The above mentioned contributions are the equivalent of the allocations Utep does so both numbers are very similar in the end. Meaning if Utep is in the red then La Tech is definitely there by the same amount as well, using the same type of math. however since those allocations are taken into account, both are slightly over in the black.